DE of RNAseq Malus data
DESeq2 edgeR log2FoldChange > 1 Padj < 0.05
SEEK ID: https://sandbox11.fairdomhub.org/assays/8
Experimental assay
Projects: de.KCD summer school 2026
Investigation: hidden item
Study: hidden item
Assay position:
Assay type: Transcriptional Profiling
Technology type: Rna-seq
Organisms: No organisms
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Created: 2nd Oct 2026 at 08:58
Last updated: 2nd Oct 2026 at 08:58
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https://orcid.org/0000-0003-0696-3505PhD research scientist and bioinformatician working across microbial ecology, plant–microbe interactions, microbiome research, metagenomics, transcriptomics, NGS, and reproducible scientific computing. I develop and apply bioinformatics workflows in Linux using R, Bash, Python, and domain-specific tools. My current methodological interests include agentic AI for scientific workflows, scientific evidence processing and RAG, reproducibility, and evaluation of AI-supported research workflows.
Modern life sciences generate data at a scale and complexity that fundamentally depend on scalable computing infrastructures and rigorous research data management. From assembling individual genomes, exploring complex microbial communities to building graph-based pangenomes, researchers today face both unprecedented opportunities and significant methodological challenges, not only in analysis, but also in how data and workflows are stored, shared, and sustained.
Programme: de.KCD summer school 2026
Public web page: https://events.hifis.net/event/3921/overview
