DEMO: Searching for new Limnochordia species of the genus DTU010 in biogas plants
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Recent survey of anaerobic digesters to uncover distinct microbiome signatures, finding the order Clostridia MBA03 (a subgroup of Limnochordia) to be highly abundant. Follow‑up analyses showed that Limnochordia genomes are resilient and metabolically versatile, e.g. capable of fermenting sugars and amino acids across varied reactor conditions, suggesting they stabilize biogas reactions. Phylogenetic analysis revealed 5 distinct families (DTU010, DTU012, B1SED10-159, JAAvYFS01, SLO01) encompassing 18 genera, with
the greatest diversity within families DTU010 and DTU012.
However, none of these candidate species could be cultivated yet. So the question is:
Can we assemble and identify genomes of the genus DTU010 in our dataset?
SEEK ID: https://sandbox11.fairdomhub.org/studies/5
DEMO: Cloud Enabled (Meta/Pan)Genomics
Projects: de.KCD summer school 2026
Study position:
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Creators and Submitter
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Created: 2nd Oct 2026 at 08:27
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https://orcid.org/0000-0002-4980-3512Wolfgang Müller leads the Scientific Databases and Visualisation Group at HITS. He is Privatdozent at the Department for Business Informatics and Applied Informatics at the Universität Bamberg.
1996 he obtained a Diploma degree in physics at the University of Constance, with experimental work on soap foams at the CNRS Institute Charles Sadron at Strasbourg. He studied Computer Science in parallel at the FernUni Hagen. He obtained his diploma with a diploma thesis about data mining. 2001 he obtained ...
Modern life sciences generate data at a scale and complexity that fundamentally depend on scalable computing infrastructures and rigorous research data management. From assembling individual genomes, exploring complex microbial communities to building graph-based pangenomes, researchers today face both unprecedented opportunities and significant methodological challenges, not only in analysis, but also in how data and workflows are stored, shared, and sustained.
Programme: de.KCD summer school 2026
Public web page: https://events.hifis.net/event/3921/overview
Information about the three days in which data were analyzed.
Genomics Metagenomics Pangenomics
Submitter: Wolfgang Müller
Studies: DEMO: Searching for new Limnochordia species of the genus DTU010 in biog...
Assays: DEMO: Assay 1, DEMO: Assay 1
Data from 8 different biogas plants operating under different conditions and fed differently collected and sequenced.
- Data in 1: 8 Samples (as described in samples_metadata.tsv)
- Data out 1: 8 sets of pairs of fastq files (forward & reverse), as described in run_metadata.tsv, located in wednesday→data
Submitter: Wolfgang Müller
Assay type: Metagenomics
Technology type: Technology Type
Investigation: DEMO: Cloud Enabled (Meta/Pan)Genomics
Creators: Wolfgang Müller, Sebastian Jünemann
Submitter: Wolfgang Müller
